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Related Time-Series Resources

Resources related to HCTSA including talks/demos, workflow examples and related packages.

A collection of good resources for time-series analysis (including in other programming languages like python and R) are listed here. See also larger collections of time-series resources, by Lukasz Mentelarrow-up-right and, focused on python: Max Christarrow-up-right.

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Time-Series Data

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Feature sets derived from hctsa

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hctsa

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Feature-based time-series packages developed by others

There is a list of python-based packages for time-series analysis that is worth taking a look at, in addition to those packages highlighted below:

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Other packages and resources


CompEnginearrow-up-right

Accompanying web resource that provides a self-organising database of time-series data. It allows users to upload, explore, and compare thousands of different types of time-series data.

pyspiarrow-up-right

pyspi is a comprehensive python library for computing hundreds of statistics of pairwise interactions (SPIs) directly from multivariate time series (MTS) data.

herearrow-up-right
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This reduced set of 22 features, determined through a combination of classification performance (across 93 problems) and mutual redundancy (as explained in ), is available as an efficiently coded C implementation.

A reduced set of 16 features (trained on mouse fMRI data), coded in C with wrappers for use in python, R, etc.

Provides code for setting a hctsa feature-extraction job running on a computing cluster without leaving your local machine (with associated Julia helper code).

Provides MATLAB code for distributing hctsa calculations across nodes of a computing cluster (using pbs or slurm schedulers).

A repository for testing new time-series analysis algorithms for redundancy (and assessing whether to include into hctsa).

A work in progress to recode many hctsa time-series analysis features into native python code.

This excellent repository allows users to run hctsa software from within python.

Some preliminary python code for analyzing the results of hctsa calculations.

Native python time-series code to extract hundreds of time-series features, with in-built feature filtering. See the .

Kats is a toolkit for analysing time-series data in python, and includes basic feature extraction functionality.

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theft (Tools for Handling Extraction of Features from Time series) allows users to compute various open time-series features sets and contains associated tools for visualising and analysing the results.

TSFEL, 'Time Series Feature Extraction Library', is a python package with implementations of 60 simple time-series features (with unit tests).

A flexible and efficient toolkit for flexible time-series processing & feature extraction, that makes minimal assumptions about sequential data. Includes support for a range of feature sets, including tsfresh, catch22, TSFEL, and Kats.

Includes a wide range of useful signal processing tools (like power spectral densities, detrending and bandpass filtering, and empirical mode decomposition). It also includes estimation of complexity parameters (many entropies and correlation dimensions, see part of readme ) as well as detrended fluctuation analysis.

Makes available existing collections of time-series data for analysis.

Includes implementations of a range of time-series features.

Provides a collection of tools for the analysis of tidy time-series data represented as a .

A unified framework for machine learning with time series.

An open-source library of efficient algorithms to analyse time series using GPU and CPU.

A python-based nonlinear time-series analysis and complex systems code package. See this .

A python package for performing machine learning using time-series data, including loading datasets from the UCR/UAE repository.

A python package that can extract features from multivariate time series.

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catch22arrow-up-right
this 📗 paperarrow-up-right
herearrow-up-right
catchamouse16arrow-up-right
autohctsaarrow-up-right
distributedhctsaarrow-up-right
Candidate Feature Labarrow-up-right
hctsa-pyarrow-up-right
pyopyarrow-up-right
hctsaAnalysisPythonarrow-up-right
tsfresharrow-up-right
paperarrow-up-right
Katsarrow-up-right
theftarrow-up-right
TSFELarrow-up-right
tsflexarrow-up-right
NeuroKitarrow-up-right
herearrow-up-right
tscompdataarrow-up-right
tsfeaturesarrow-up-right
feastsarrow-up-right
tsibblearrow-up-right
sktimearrow-up-right
Khivaarrow-up-right
pyunicornarrow-up-right
publicationarrow-up-right
tslearnarrow-up-right
TSFusearrow-up-right