# Highly comparative time-series analysis with hctsa ## Highly comparative time-series analysis with hctsa - [Introduction](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/readme.md): Welcome to the hctsa documentation! - [Getting started](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/example-analysis-code.md): Some advice for getting started with an hctsa analysis - [Publications using hctsa](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/publications-using-hctsa.md): This page lists scientific research publications that have used hctsa. - [UMAP Projections](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/umap-projections.md): Below are some UMAP projections of UEA/UCR time-series classification datasets. - [Related Time-Series Resources](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/related-time-series-resources.md): Resources related to HCTSA including talks/demos, workflow examples and related packages. - [List of included code files](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/list-of-included-code-files.md): A full list of Matlab code files, organized loosely into broad categories, with brief descriptions - [FAQ](https://time-series-features.gitbook.io/hctsa-manual/information-about-hctsa/faq.md): Frequently asked questions pertaining to the use of hctsa. - [General advice and common pitfalls](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/advice-and-common-pitfalls.md): Thinking about running an hctsa analysis? Read this first. - [Installing and setting up](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/setup.md) - [Structure of the hctsa framework](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/setup/hctsa_structure.md) - [Overview of an hctsa analysis](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/setup/within_matlab.md) - [Compiling binaries](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/setup/compiling_binaries.md) - [Running hctsa computations](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/calculating.md) - [Input files](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/calculating/input_files.md) - [Performing calculations](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/calculating/running_computations.md) - [Inspecting errors](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/calculating/dealing_with_errors.md) - [Working with hctsa files](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/calculating/working_with_hctsa_files.md) - [Analyzing and visualizing results](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing.md) - [Assigning group labels to data](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/grouping.md) - [Filtering and normalizing](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/filtering_and_normalizing.md) - [Clustering rows and columns](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/clustering_rows_and_columns.md) - [Visualizing the data matrix](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/visualizing_the_data_matrix.md) - [Plotting the time series](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/plotting_the_time_series.md) - [Low dimensional representation](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/low_dim.md) - [Finding nearest neighbors](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/sim_search.md) - [Investigating specific operations](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/feature_summary.md) - [Exploring classification accuracy](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/ts_classify.md) - [Finding informative features](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/ts_topfeatures.md) - [Interpreting features](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/interpreting-features.md) - [Comparing to existing features](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/feature-comparison.md) - [Working with short time series](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/analyzing_visualizing/working-with-short-time-series.md) - [Working with a mySQL database](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database.md) - [Setting up the mySQL database](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/setup_mysql_database.md) - [The database structure](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/database_structure.md) - [Populating the database with time series and operations](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/populating.md) - [Adding time series](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/adding_time_series.md) - [Retrieving from the database](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/retrieving_to_compute.md) - [Computing operations and writing back to the database](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/computing_and_writing_back.md) - [Cycling through computations using runscripts](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/computing_runscripts.md) - [Clearing or removing data](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/clearing_or_removing_data.md) - [Retrieving data from the database](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/retrieving.md) - [Error handling and maintenance](https://time-series-features.gitbook.io/hctsa-manual/installing-and-using-hctsa/overview_mysql_database/maintenance.md) --- # Agent Instructions This documentation is published with GitBook. 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